One of my females had laid at least two eggs... What should I do with them? Should I leave them in there for a bit or discard them? I dont really want the hastle of incubating them.

if you dont want to incubate them then put them in the freezer for 24hours then dispose of them, that way if they are fertile, theres no chace of one managing to hatch

tbh if you dont want to breeed from them, then personaly i would split them up, mind you i dont keep male/females together anyweays, they only see eachother for some nookie and then they go their seperate homes again, lot less stress for them as the males are always hounging them . . even when gravid lol horny little beggers they are